Assimilated by the Borg, Janeway, Torres, and Tuvok plot to release a virus into the Borg Collective which will allow members of Unimatrix Zero to retain their individuality in the real world and resist the Borg Queen.

Seven of Nine's life is threatened when her cortical implants begin to degrade. Icheb wants to help her, but his proposition is very risky.

Tom's sudden entry in an alien spacecraft race throws a wrench into B'Elanna's labored plans for a romantic holodeck getaway for two, threatening their relationship.

Tuvok investigates a series of assaults that are targeted at the former Maquis members.

Stolen and sold off, The Doctor winds up enslaved at an alien hospital, where social status strictly defines the quality of provided health care.

The Pathfinder Project makes contact with Voyager again and this time they transmit a hologram of Reginald Barclay to interact with the crew. However a certain group of aliens have seen a way to make a huge profit.

When the Delta Flyer is attacked, The Doctor must hide his program in Seven's Borg implants. Meanwhile, Tuvok undergoes the pon farr.

When the Delta Flyer comes to the aid of a medical transport, Harry Kim gets his first command.

Voyager answers a distress call from a Hirogen outpost only to find carnage caused by holographic technology that Captain Janeway has given them.

Voyager encounters an energy field which leaves each section, and its crew, existing in a different time period.

Tom and B'Elanna are overjoyed to discover that Torres is pregnant, however BElanna starts having nightmare flashbacks of her own childhood.

After Voyager rescues the crew of a severely damaged alien vessel carrying convicts to their executions, the crew begins to question the aliens' legal system.

Voyager encounters an ancient Klingon battlecruiser. The Klingons aboard it had set out long ago to find their savior, and they believe it to be Tom and B'Elanna's unborn child.

Voyager slips into a pocket of subspace where many other ships are trapped and must steal from each other to survive. Only with the help of other star ships can they all escape the void.

Upon returning from a mission, Chakotay, Kim and Neelix find Voyage abandoned and the Doctor the only crew member aboard. The entire crew have been kidnapped, their memories erased and they are now working in an alien industrial complex.

Chakotay and Neelix take jobs on the new planet, and try to rescue their amnesiac crewmates who don't want to leave.

When Seven tries to perfect her social skills on the holodeck, her new emotions soon overwhelm her Borg implants. Meanwhile, Voyager accidentally wanders into an interstellar firing range.

When Q finds his rebellious son too much to handle, he brings him to Voyager in the hope that Captain Janeway can teach him responsibility and compassion.

The Doctor completes work on a holonovel that depicts the crew of Voyager in rather unflattering roles as they abuse and scorn the Emergency Medical Hologram. When the holonovel is published without his permission, the issue of The Doctor's legal rights is brought into question.

For the first time in years Voyager gets a mission from Starfleet Command. Retrieve the 21st century probe Friendship One from a nearby planet.

Chakotay and Seven of Nine's shuttle is crippled by an energy field and they crash on a planet inhabited by a primitive species. Meanwhile, Paris gets a speeding ticket in the Delta Flyer, and is sentenced to a three-day safety course.

Voyager finds a colony of Talaxians far from their home planet. When Neelix begins to bond with them he makes a major decision.

The Doctor must become a master of disguise and steal Voyagers warp core, to save Captain Janeway.

Ten years after Voyager's return form a 23 year journey across the galaxy, Admiral Janeway breaks all the temporal rules and journeys back in time to change a decision she made that prolonged their journey by 16 years.